PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010350
Common NameLOC102604975
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 306aa    MW: 34069.8 Da    PI: 7.4034
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010350genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY55.89e-18122172258
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                           dDgy+WrKYGqK++ g+ fpr  YrCts      ++++rs+ d +v+eit++g H++
  PGSC0003DMP400010350 122 DDGYSWRKYGQKDILGAVFPRDCYRCTS------RHMQRSDVDRTVFEITNKGYHTC 172
                           8**************************7......689******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-16108172IPR003657WRKY domain
SuperFamilySSF1182906.15E-15120172IPR003657WRKY domain
SMARTSM007741.9E-18121174IPR003657WRKY domain
PfamPF031061.3E-14122172IPR003657WRKY domain
PROSITE profilePS5081113.701122170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDYDSLINKL TQGMEHTKQL RTYLSSVAST SKAIPELLLQ KILSSYEQSL LILKWSGSPV  60
QSVPAAPAIE SMVSGDVKPR SDDNKRSSED HQKLIHISKR RKPYFSEQVR VKSESEVEGP  120
QDDGYSWRKY GQKDILGAVF PRDCYRCTSR HMQRSDVDRT VFEITNKGYH TCLRHQVTNS  180
TLQATSPEKE ASHHGVIVGG CSSSFVSPTT PESNYLSISN CQMNGLGIAH NLDHSESYPS  240
DIGLFRDLHH SDSDRTDISA NTSTTSSSMG GEFARLSGGR PDFSIWTKRH PQTKANTPQK  300
DDKDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-173HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166339.10.0PREDICTED: probable WRKY transcription factor 53 isoform X2
SwissprotQ9SUP62e-33WRK53_ARATH; Probable WRKY transcription factor 53
TrEMBLM1A5600.0M1A560_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000149510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-34WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]